I have included Myspace and YouTube links to clips from most of the videos so that you can get an idea of the quality.

17/08/1985  Rockpalast, Germany     [Setlist]     Part 1     Part 2
To watch Jungle Man click here

23/11/1986  The Ritz, Austin, Texas     [Setlist]
To watch American Ghost Dance click here

24/11/1986  Mississippi Nights, St Louis     [Setlist]     Part 1     Part 2
I couldn’t get a good cut to put up a clip for this show.

02/09/1987  Jimi Hendrix Tribute, The Roxy  (damaged version)

29/09/1987  Vans Skate Park, Los Angeles     [Setlist]
To watch Fight Like A Brave click here

1988  VPRO Interview – Europe By Storm

04/06/1988  Provinssi Rockfest, Finland     [Setlist]     Part 1     Part 2     Part 3
This is in DVD format.  I ripped the dvd to put up clips so the quality of the video is not as good as the download.
To watch Anarchy In The UK/No Chump Love Sucker click here

16/03/1989  Orlando, Florida     [Setlist]
To watch Punk Rock Classic click here

30/12/1989  Psychedelic Sexfunk Live From Heaven     [Setlist]
To watch Good Time Boys click here

01/09/1989  Opera House, Austin, Texas    [Setlist]     Part 1     Part 2    

??/10/1989  Big Surf Waterpark, Tempe     [Setlist]
To watch Castles Made Of Sand click here

26/01/1990  Club Citta, Kawasaki, Japan     [Setlist]    Part 1     Part 2
To watch Standing On The Verge Of Getting It On click here

30/03/1990  MCM Special     [Setlist]
To watch Nobody Weird Like Me click here

05/06/1990  Pinkpop, Holland     [Setlist]
To watch If You Got Funk, You Got Style click here

31/12/1990  Cow Palace, San Francisco     [Setlist]
To watch Naked In The Rain click here

1990  VPRO – Interviews

19/10/1991  Stephens Auditorium, Ames, Iowa     Part 1     Part 2    
To watch Love Trilogy click here

05/11/1991  Landmark Theatre, Troy, New York     [Setlist]     Part 1     Part 2     Part 3
To watch No Head, No Backstage Pass click here

1992  MTV Past, Present & Future – Documentary

15/02/1992  Deinze, Belgium   
To watch Fopp/Party On Your Pussy/Red Hot Mama click here

01/03/1992  Milan     [Setlist]     Part 1     Part 2 
To watch Red Hot Mama click here

18/08/1992  Lollapalooza     [Setlist]     Part 1     Part 2
To watch Subterranean Homesick Blues click here

27/10/1992  New Zealand     [Setlist]     Part 1     Part 2 
To watch The Needle & The Damage Done click here

22/01/1993  Rock In Rio     [Setlist]     Part 1     Part 2    
To watch Stone Cold Bush click here

26/01/1993  Buenos Aires, Argentina     [Setlist]     Part 1     Part 2
To watch Heard It On The X click here

1994  VPRO – Interview with John

14/08/1994  Woodstock     [Setlist]     Part 1     Part 2
To watch Give It Away click here

28/08/1994  Reading Festival     [Setlist]     Part 1     Part 2
To watch Under The Bridge click here

??/08/1995  MTV Rockumentary

??/09/1995  MTV At Home With The Chili Peppers

27/09/1995  Subterranea Club, London     [Setlist]     Part 1     Part 2    
To watch Suffragette City click here

03/10/1995  Brixton Academy     [Setlist]     Part 1     Part 2
To watch Aeroplane click here

06/02/1996  The Spectrum, Philadelphia     Part 1     Part 2
To watch Come As You Are (intro)/Backwoods click here

09/02/1996  Madison Square Gardens Special     [Setlist]
To watch Freaky Styley click here

06/04/1996  Cow Palace, San Francisco     [Setlist]     Part 1     Part 2    
To watch My Friends click here

08/04/1996  Arco Arena, Sacramento
To watch Walkabout click here

29/06/1996  Roskilde, Denmark     [Setlist]     Part 1     Part 2
To watch Waiting Room click here

02/07/1996  Tibet Freedom Concert     [Setlist]
To watch Suck My Kiss click here

09/07/1996  Bercy, Paris      [Setlist]      Part  1      Part  2
The quality on this is not very good, but it is a great concert

26/07/1997  Fuji Rock Festival, Japan     [Setlist]
To watch Walkabout click here

14/06/1998  Tibet Freedom Concert, Washington
To watch Power Of Equality click here

20/09/1998  Stockton, California     [Setlist]     Part 1     Part 2    
To watch I Like Dirt click here

06/10/1998  Anthony Kiedis BIOrhythm – Documentary

02/06/1999  Hamburg     [Setlist]
To watch Green Heaven click here

08/06/1999  Stockholm     [Setlist]     Part 1     Part 2
To watch Emit Remmus click here

14/06/1999  Sashimi Studios, Milan     [Setlist]     Part 1     Part 2
To watch Yertle Trilogy click here

19/06/1999  Irvine Meadows (Weenie Roast)
To watch Emit Remmus click here

22/07/1999  Yonge Street, Toronto     [Setlist]
To watch Scar Tissue click here

25/07/1999  Woodstock     [Setlist]     Part 1     Part 2
To watch Sir Psycho Sexy click here

10/08/1999  Live On The Lake, Toronto
To watch Savior click here

14/08/1999  Red Square, Moscow     [Setlist]     Part 1     Part 2
To watch Me & My Friends click here

20/08/1999  Bizarre Festival, Germany     [Setlist]     Part 1     Part 2
To watch If You Have To Ask click here

06/10/1999  Luna Park, Buenos Aires, Argentina     [Setlist]
To watch Search & Destroy click here

08/10/1999  Brazil, Creditcard Hall     [Setlist]     Part 1     Part 2
To watch I Could Have Lied click here

04/11/1999  Sportshalle, Hamburg
To watch Sir Psycho Sexy click here

06/11/1999  Wembley Arena, London     [Setlist]
To watch Otherside click here

16/11/1999  POP Bercy, Paris     [Setlist]     Part 1     Part  2  
To watch Soul To Squeeze click here

09/01/2000  Budokan, Japan     [Setlist]     Part 1     Part 2
To watch Fire click here

26/01/2000  Big Day Out, Australia     [Setlist]     Part 1     Part 2
To watch Skinny Sweaty Man click here

05/08/2000  Rolling Rock Festival, Latrobe     [Setlist]
To watch Suck My Kiss click here

21/01/2001  Rock In Rio     [Setlist]     Part 1     Part 2    
To watch I Just Want Some Skank/Beverly Hills click here

24/01/2001  Buenos Aires, Argentina     [Setlist]
To watch Savior click here

19/08/2001  V2 Festival     [Setlist]     Part 1     Part 2
This is mainly shot from the big screen and the quality is not good

14/12/2001  Silverlake Benefit Concert     [Setlist]
To watch Havana Affair click here

16/05/2002  AOL Sessions

01/06/2002  VH1 Behind The Music

01/06/2002  VH1 Ultimate Albums – BSSM

04/06/2002  Olympia, Paris     [Setlist]     Part 1     Part 2
To watch I Could Die For You click here

07/06/2002  The Saturn, Hamburg     [Setlist] 
To watch I Could Die For You click here

10/06/2002  Madrid     [Setlist]
To watch Throw Away Your Television click here

29/06/2002  Rock Werchter Festival.    [Setlist]

05/07/2002  Top Of The Pops Special

07/07/2002  Vans Skate Park, Los Angeles  [Setlist]
To watch Venice Queen click here

26/07/2002  Seoul, Korea     [Setlist]
To watch Minor Thing click here

28/07/2002  Fuji Rock Festival, Japan     [Setlist]
To watch Universally Speaking click here

03/08/2002  VH1 Backyard BBQ

09/10/2002  Santiago, Chile     [Setlist]     Part 1     Part 2
To watch The Zephyr Song click here

12/10/2002  Sao Paulo, Brazil     [Setlist]     Part 1     Part 2

02/11/2002  Japanese TV Special

??/??/2002   An Hour With RHCP - Documentary

31/01/2003  Filaforum, Milan     Part 1     Part 2 
To watch Warm Tape click here

02/02/2003  Palaghiaccio Marino, Rome     [Setlist]     Part 1     Part 2    
To watch This Is The Place click here

27/04/2003  Coachella     Part 1     Part 2 
To watch The Zephyr Song click here

15/05/2003  Bell Centre, Montreal     [Setlist]     Part 1     Part 2    
To watch Honeysuckle Rose click here

20/05/2003  Madison Square Gardens, New York     [Setlist]     Part 1     Part 2    
To watch Breaking The Girl click here

??/??/2003  V2003
UK TV Broadcast - Part of concert + Interviews with Anthony, Flea & Chad

11/10/2003  The Great Western Forum, Los Angeles     [Setlist]     Part 1     Part 2    
To watch Maybe click here

19/05/2004  RHCP In Profile - Documentary

05/06/2004  Rock AM Ring     [Setlist]
To watch Brandy click here

15/06/2004  Parc Des Princes, Paris     [Setlist]     Part 1     Part 2     Part 3    Part 4   
To watch Rolling Sly Stone click here

25/07/2004  Rock Odyssey, Yokohama, Japan (pro-shot)     [Setlist]
To watch Get On Top click here

25/07/2004  Rock Odyssey (Fullest Version)(Big screens shot)     [Setlist]     Part 1     Part 2
To watch Leverage Of Space click here

25/08/2005  The Greek Theater, LA
To watch Otherside click here

??/??/2006  AOL Sessions (Includes Behind Scenes Interview)

??/04/2006  T4 Music Special (Includes Interview)

14/04/2006  Live Friday Night With Jonathon Ross

18/04/2006  Bilbao, Spain     [Setlist]
To watch Hump De Bump click here

19/04/2006  MTV Alcatraz, Milan     [Setlist]

20/04/2006  La Cigale, Paris     [Setlist]
To watch 21^st Century click here

21/04/2006  Taratata TV Special

23/04/2006  Copenhagen Promo Show      [Setlist]

00/05/2006  Fuse TV Special – Breaking The Record

14/04/2006  BBC Promo Concert (Fullest Version)     [Setlist]     Part 1     Part 2 
To watch Desecration Smile click here

07/05/2006  MTV Essential RHCP - Documentary

13/05/2006  KROQ Special      [Setlist]

03/06/2006  Rock In Rio, Lisboa, Portugal     [Setlist]     Part 1     Part 2      
To watch Stadium Arcadium click here

05/06/2006  Pinkpop     [Setlist]     Part 1     Part 2    
This is an asf file and although it is the full concert, the quality is not that good.  Great show though.

14/06/2006  Prague     [Setlist]     Part 1     Part 2 
To watch For Emily, Wherever I May Find Her click here

15/06/2006  Berlin     [Setlist]     Part 1     Part 2     Part 3    
To watch What Is Soul?/Magic Johnson click here

29/06/2006  Rock Werchter     [Setlist]
To watch Warlocks click here

03/07/2006  Reading (incomplete)
The quality of this is not too bad, but it is only the first 25 mins

07/07/2006  T In The Park     [Setlist]
To watch Throw Away Your Television/Don’t You Ever Leave click here

29/07/2006  Fuji Rock      [Setlist]

07/10/2006  New York     [Setlist]

??/10/2006  Abbey Road, T4 TV Special

21/11/2006  Later With Jools Holland

27/11/2006  Stuttgart     [Setlist]     Part 1     Part 2     Part 3     Part 4    
To watch Songbird click here

29/11/2006  Milan     [Setlist]     Part 1     Part 2     Part 3    
To watch Nobody Weird Like Me click here

11/12/2006  Stockholm     [Setlist]     Part 1     Part 2     Part 3    
To watch C’mon Girl click here

12/12/2006  Stockholm     [Setlist]     Part 1     Part 2     Part 3    
To watch Blue Sunday click here

??/??/2006  Phonomenon - The Ultimate Review - Documentary    Part 1     Part 2     Part 3    Part 4 

23/01/2007  Charlotte, NC     [Setlist]
The quality of this is quite good

03/03/2007  Campaign, Illonois  (First 3/4 hour only) 

00/06/2007  VPRO Thema Documentary

03/07/2007  Chorzow, Poland (TV Concert)
To watch This Velvet Glove click here

 07/07/2007  Live Earth, London
To watch So Much I click here